miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|119007934|gb|DV443952.1|DV443952 ATCGTCCCTATCAGGTCCAGTCTTAGCTGCCGTGTCCTTCTTTGAAGCTAAAATTGAAGGCAAAGGTGGCCATGCTGCAG
AGCCCCATACAAATGTGGATCCAATACTTGCTGTATCATTTGCAACTCTGGCGTTGCAACAGCTCATCTCAAGAGAAGTT
GATCCCCTCCATAGTGAAGTGCTATCTGTTACTTATGTCAAAGGCGGAACTGCCATAAATGTAATTCCATCATATGTTGA
ATTTGGGGGCACTTTGAGGAGTCTATCGACTGAGGGTTTGCATCAACTCCAGCGGAGAGTGAAAGAGGTTATTGAAGGCC
AGGCAGCTGTGCACAGATGTACCGCATACATTAACATGGAAAATGAAGGCTACCCAGCATATCCTGCAGTTTTGAATGAT
GAAAGCTTGAATTCGCATGTTCAGAGGATTGGTAGTCTTCTTCTTGGTCCTGAGAATGTGAAGATGGGTGAGAAGATGAT
GGCTGGTGAGGACTTCGCGTTCTATCAAGAAGTGATTCCTGGAATCATGCTCAGCATTGGAATTAGAAATGAAAAATTAG
GTTCAATTCACTCCCCCCACTCACCTCACTTCTTTCTTGATGAAGATGTTCTTCCAGTTGGAGCAGCATTACACACAGCT
CTTGCAGNNACTTATCTGAATGAGCATCAACAGTCTGTTGAACAGTAAGTAATTAAAGGTCACAAGCACAATGGATGAAA
TGAACAACTAAATGCTGCTTTTTGTCCATATTGC




Most similar to sp|Q7XUA8|ILL5_ORYSJ

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q7XUA8|ILL5_ORYSJ IAA-amino acid hydrolase ILR1-like 5 OS=Oryza
           sativa subsp. japonica GN=ILL5 PE=2 SV=1
          Length = 426

 Score =  288 bits (738), Expect = 2e-77
 Identities = 137/224 (61%), Positives = 170/224 (75%)
 Frame = +2

Query: 11  SGPVLAAVSFFEAKIEGKGGHAAEPHTNVDPILAVSFATLALQQLISREVDPLHSEVLSV 190
           +GP  AAV F+EAKIEGK G A  PH NVDPI+A SF  L+LQQLISRE DPLHS+VLSV
Sbjct: 196 AGPTQAAVCFYEAKIEGKTGKAETPHLNVDPIVAASFVILSLQQLISREDDPLHSQVLSV 255

Query: 191 TYVKGGTAINVIPSYVEFGGTLRSLSTEGLHQLQRRVKEVIEGQAAVHRCTAYINMENEG 370
           TYVKGG  I+  P  +EFGGTLRSL+TEGL++LQ+RVKEV+EGQAAVHRC   + ++ + 
Sbjct: 256 TYVKGGNTIDATPPVIEFGGTLRSLTTEGLYRLQKRVKEVVEGQAAVHRCKGVVQIKRDD 315

Query: 371 YPAYPAVLNDESLNSHVQRIGSLLLGPENVKMGEKMMAGEDFAFYQEVIPGIMLSIGIRN 550
           YP YPAV NDE L+ HV+ +G  LLGP+ VK GEK+MAGEDFAFYQ+++PG+M  IGIRN
Sbjct: 316 YPMYPAVFNDEKLHHHVETVGRRLLGPDKVKPGEKIMAGEDFAFYQQLVPGVMFGIGIRN 375

Query: 551 EKLGSIHSPHSPHFFLDEDVLPVGXXXXXXXXXXYLNEHQQSVE 682
            ++GS+H+ H+P FF+DEDV+P+G          YL E     E
Sbjct: 376 GEVGSVHTVHNPKFFVDEDVIPIGAALHTALAEMYLTERSTEGE 419